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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7635998_7636868_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7635998 - 7636868
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAGGA
5'SS Class:
major
3'SS Sequence:
TTTGTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATCAAAT
Flanking Amino Acid:
QSVEENQDLKKELLKCKQEA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
67.3
38.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.7
0.82
0.8
80.7
35.9
Minor 5ss
26.2
-2.7
3
30.9
42.4
Minor BPS
48.9
-0
2
75.07
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000023654
7633189 - 7643577
10389
ENSAPLT00000046457
7633189 - 7654658
21470
ENSAPLT00000044341
7633189 - 7653773
20585