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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7636923_7637028_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7636923 - 7637028
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
GTTTCGTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
GTGTTTTGCACA
Flanking Amino Acid:
EHGACPEEQLIIIRSRLDQS
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
75.8
0.58
1
73.1
42.1
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
47.5
-0.2
1.9
60.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023654
7633189 - 7643577
10389
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000040602
7627058 - 7651201
24144
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000046457
7633189 - 7654658
21470