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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7637119_7639756_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7637119 - 7639756
Intron Length:
2638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
EAKKMISGLQALLLNGSLPE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.4
0.68
0.8
72.7
37.4
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000046457
7633189 - 7654658
21470
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000023654
7633189 - 7643577
10389
ENSAPLT00000040602
7627058 - 7651201
24144