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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7641186_7642861_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7641186 - 7642861
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGAT
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTCATTT
Flanking Amino Acid:
MGGKQVKCLASPSPIHS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
70.2
35.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
32.7
-2
3.4
43.1
45.5
Minor BPS
56.4
0.28
1.8
76.55
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023654
7633189 - 7643577
10389