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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7647429_7648646_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7647429 - 7648646
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGATATTTATCT
Flanking Amino Acid:
SGRDVFRHRQRNSSMDEEIE
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.2
0.75
0.8
74.7
39.9
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
56.7
0.29
1.8
74.73
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000046457
7633189 - 7654658
21470
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000040602
7627058 - 7651201
24144