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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7648897_7650042_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7648897 - 7650042
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGCC
5'SS Class:
major
3'SS Sequence:
TTGCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTACCC
Flanking Amino Acid:
KIRMHQTSAKDIVDGNLKSI
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
66.7
40.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.6
0.73
0.8
77
31.6
Minor 5ss
33
-1.9
3.3
45.2
42.7
Minor BPS
63
0.39
1.9
76.69
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000046457
7633189 - 7654658
21470
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000040602
7627058 - 7651201
24144