About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7650169_7650906_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7650169 - 7650906
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
VILASLIEIVAGEKLNGVQV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.65
0.8
77.5
31.1
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000040602
7627058 - 7651201
24144
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000046457
7633189 - 7654658
21470
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000044341
7633189 - 7653773
20585