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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7651037_7651144_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7651037 - 7651144
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAAAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCTTTTCCATT
Flanking Amino Acid:
RDETIPLFSKQQLQAYVAWV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
71.9
39.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.6
0.85
0.7
85.2
28.1
Minor 5ss
19.8
-3.5
4
31.7
42.9
Minor BPS
48.5
-0
1.9
70.72
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040602
7627058 - 7651201
24144