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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7651037_7661661_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7651037 - 7661661
Intron Length:
10625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCTTTTCCATT
Flanking Amino Acid:
LDILQEGFTEQQLQAYVAWV
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.6
0.85
0.7
85.2
28.1
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
48.5
-0
1.9
70.72
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000005182
7629463 - 7661721
32259