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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7680253_7681744_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7680253 - 7681744
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CTTTCCTGAAGC
Flanking Amino Acid:
PSWLETGLSEMRLEKDKFSV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.1
36
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
48.5
-0.1
2.8
68
43.2
Minor BPS
64.7
0.44
1.8
75.11
41.5

Associated Gene:

Gene:
CRYAB
Ensembl Gene ID:
ENSAPLG00000026251
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039246
7680055 - 7683182
3128