About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7681868_7682978_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7681868 - 7682978
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCTG
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATCAGGG
Flanking Amino Acid:
EIHGKHEERQDEHGFIAREF
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.8
47.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.4
0.86
0.7
83.7
24.3
Minor 5ss
42.3
-0.9
3.1
58.7
45.8
Minor BPS
37.7
-1
2.2
45.84
46.1

Associated Gene:

Gene:
CRYAB
Ensembl Gene ID:
ENSAPLG00000026251
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039246
7680055 - 7683182
3128