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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7685136_7685637_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7685136 - 7685637
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TTATATTTAGCC
Flanking Amino Acid:
IVQPKPLPSQYSHCFETTYS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
59.8
0.29
1.7
72.37
38.5

Associated Gene:

Gene:
C11orf1
Ensembl Gene ID:
ENSAPLG00000004708
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004842
7684492 - 7685955
1464