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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7687318_7687450_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7687318 - 7687450
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAGAAT
U12 Branch Point Sequence:
ACTAGTAGAATT
Flanking Amino Acid:
NRELLSHFFHSCAEVLTEEG
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
48
-0.1
1.6
58
45.4
Major PPT
85.2
0.79
0.7
76.8
31.9
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
41.2
-0.5
2
56.56
40.2

Associated Gene:

Gene:
FDXACB1
Ensembl Gene ID:
ENSAPLG00000004681
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004805
7686230 - 7689992
3763