About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7687655_7688280_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7687655 - 7688280
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
TATGTATTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGTATT
Flanking Amino Acid:
TIHGYKCTGYRSQDKSFCIE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.8
0.45
1.1
62.6
47.2
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
49.3
0.02
2
77.48
39.2

Associated Gene:

Gene:
FDXACB1
Ensembl Gene ID:
ENSAPLG00000004681
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004805
7686230 - 7689992
3763