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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7688440_7688622_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7688440 - 7688622
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATTTTTCACA
Flanking Amino Acid:
VPQVLVDKINRGFLEVNSNH
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.5
0.84
0.7
83.7
31.1
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
63.3
0.41
1.7
75.26
36.4

Associated Gene:

Gene:
FDXACB1
Ensembl Gene ID:
ENSAPLG00000004681
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004805
7686230 - 7689992
3763