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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7690295_7691371_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7690295 - 7691371
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTCTA
5'SS Class:
major
3'SS Sequence:
TTCTTTGTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATATTTGTATTC
Flanking Amino Acid:
AGRPAAAAAPRPPGSKAGQV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1.1
70.8
41.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.3
0.52
1
69.1
41.8
Minor 5ss
36.5
-1.5
3.3
49.9
46.3
Minor BPS
44.7
-0.4
2.1
56.33
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004285
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004411
7690089 - 7712970
22882