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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_77002_77126_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77002 - 77126
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
CCTTCCTGCATT
Flanking Amino Acid:
KPWRTHREQKEPTAAPWSPG
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
50.1
0
1.4
63
43.2
Major PPT
76.1
0.59
0.9
69
36
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
53.9
0.2
2
72.16
45.3

Associated Gene:

Gene:
HYLS1
Ensembl Gene ID:
ENSAPLG00000000881
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024842
76046 - 81705
5660