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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7711899_7712752_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7711899 - 7712752
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TAAAGATTGATT
Flanking Amino Acid:
IAYKPFLDASRSSKLLRAFY
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
45.4
-0.2
2
62.66
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004285
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004411
7690089 - 7712970
22882