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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_80356_80754_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80356 - 80754
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTGTTTGTAACA
Flanking Amino Acid:
VEKNPRKPQYSMAVEFPLVL
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
75.5
0.57
0.7
69
31.5
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
52.7
0.08
2
65.7
41.8

Associated Gene:

Gene:
PUS3
Ensembl Gene ID:
ENSAPLG00000013285
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039706
74392 - 81751
7360
ENSAPLT00000033372
52985 - 81316
28332
ENSAPLT00000013828
77557 - 81316
3760