Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_81976_82072_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81976 - 82072

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGCG

5'SS Class:

strong_major

3'SS Sequence:

TCGTCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGGGAG

U12 Branch Point Sequence:

TGCCTCTCGTCC

Flanking Amino Acid:

REEEEEKKREVPGNPARRRA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.8

40.2

Major BPS

33.2

-1

1.5

20.1

33.9

Major PPT

72.1

0.5

0.8

65.9

30.2

Minor 5ss

31.2

-2.1

3.2

38.5

46.7

Minor BPS

-1.1

3.4

51.63

39.7

Associated Gene:

Gene:

RPUSD4

Ensembl Gene ID:

ENSAPLG00000013250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031692

81778 - 84242

2465

ENSAPLT00000013799

81823 - 89214

7392