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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_85106_85807_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
85106 - 85807
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
CTGTCACACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGAAAA
U12 Branch Point Sequence:
CTGTCCCAGATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
56.8
42.6
Major BPS
50.2
0.01
1.1
57.3
36.3
Major PPT
65
0.34
1
58.3
36.5
Minor 5ss
23.9
-3
3
21
37.4
Minor BPS
46.5
-0.2
2
58.33
42

Associated Gene:

Gene:
PANX3
Ensembl Gene ID:
ENSAPLG00000013224
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027495
84322 - 88750
4429