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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1030093_1030727_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1030093 - 1030727
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CCTTCACTAACC
Flanking Amino Acid:
KEKVAYLEAENLEMHDRIEH
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
73.2
37.5
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
79.7
0.67
0.8
73.3
31.6
Minor 5ss
37.5
-1.4
2.9
50.7
45.7
Minor BPS
54.7
0.13
2
68.37
43

Associated Gene:

Gene:
TUFT1
Ensembl Gene ID:
ENSAPLG00000009480
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009888
1022419 - 1031941
9523