About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1030829_1031122_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1030829 - 1031122
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
CCTGGCTGAACA
Flanking Amino Acid:
RARSKSEYVSSKRLSGPKPL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
66.3
45.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
38.3
-1.3
3.1
49
47
Minor BPS
48.3
-0.1
2
59.45
46.4

Associated Gene:

Gene:
TUFT1
Ensembl Gene ID:
ENSAPLG00000009480
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009888
1022419 - 1031941
9523