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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1057301_1059148_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1057301 - 1059148
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGGACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCC
Flanking Amino Acid:
VAAQLPAGAQGCEDMAVPAG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
66.6
0.37
1
59
41.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
42.9
-0.5
2.2
49.56
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025785
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026765
1057210 - 1061400
4191