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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1060877_1060987_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1060877 - 1060987
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCTC
5'SS Class:
major
3'SS Sequence:
TTCACCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTTTTCATC
Flanking Amino Acid:
IYAVVSTKAQGPRHFQEPQS
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
70
0.45
1
65.6
35.9
Minor 5ss
28.5
-2.5
3.6
40.5
46
Minor BPS
49.8
-0
1.7
62.44
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025785
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030212
1058247 - 1061400
3154
ENSAPLT00000026765
1057210 - 1061400
4191
ENSAPLT00000045379
1058247 - 1061592
3346