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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_106624_110327_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106624 - 110327
Intron Length:
3704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCATCCCGAATC
Flanking Amino Acid:
QRITDERNRQVTFTKRKFGL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
81.4
0.71
0.8
72.6
37.7
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
53.3
0.08
1.8
65.05
40.4

Associated Gene:

Gene:
MEF2D
Ensembl Gene ID:
ENSAPLG00000007271
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029901
87158 - 140670
53513
ENSAPLT00000027360
87158 - 123637
36480
ENSAPLT00000017385
87158 - 140670
53513
ENSAPLT00000007584
87158 - 110381
23224