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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1082866_1085495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1082866 - 1085495
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACATAAC
5'SS Class:
major
3'SS Sequence:
GCTCTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTCAG
U12 Branch Point Sequence:
CCTGCGTCAGCC
Flanking Amino Acid:
WLVVSFCRVWGMGRGTRETV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
65.8
40.2
Major BPS
42.3
-0.4
1.7
45
47.8
Major PPT
74.4
0.55
0.8
65.2
36.2
Minor 5ss
33.9
-1.8
3
36.1
41.2
Minor BPS
40.2
-0.7
2.4
49.78
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015339
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034876
1082814 - 1090116
7303