Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_110610_123567_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

110610 - 123567

Intron Length:

12958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGAGC

5'SS Class:

major

3'SS Sequence:

TCCCTCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

TGGGTCTCACTC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

38.8

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

77.6

0.62

0.7

72.2

25.8

Minor 5ss

31.2

-2.1

3.4

42.5

44.6

Minor BPS

-0.4

1.8

50.2

41.2

Associated Gene:

Gene:

MEF2D

Ensembl Gene ID:

ENSAPLG00000007271

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029901

87158 - 140670

53513

ENSAPLT00000027360

87158 - 123637

36480

ENSAPLT00000017385

87158 - 140670

53513