Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1106209_1106530_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1106209 - 1106530

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGCGGG

5'SS Class:

major

3'SS Sequence:

TTCCTTACTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

CGTTCCTTACTG

Flanking Amino Acid:

FCITHDMTPKAFLERYLSAG

Intron Amino Acid Position:

436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.1

54.2

Major BPS

0.3

62.3

30.4

Major PPT

82.7

0.74

0.8

77.7

29.5

Minor 5ss

29.2

-2.4

3.4

37.8

Minor BPS

61.4

0.22

1.8

63.65

44.7

Associated Gene:

Gene:

VANGL2

Ensembl Gene ID:

ENSAPLG00000024887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018258

1105948 - 1111137

5190