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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1106763_1107214_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1106763 - 1107214

Intron Length:

452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGGGC

5'SS Class:

major

3'SS Sequence:

TTTCTCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAGGAT

U12 Branch Point Sequence:

GAAGCACCAAAG

Flanking Amino Acid:

HERRVRKRRARLVVAVEEAF

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

65.7

Major BPS

47.3

-0.1

1.3

43.5

39.2

Major PPT

77.2

0.61

0.9

31.1

Minor 5ss

28.5

-2.5

3.6

41.2

45.5

Minor BPS

35.1

-1.2

1.9

34.6

38.3

Associated Gene:

Gene:

VANGL2

Ensembl Gene ID:

ENSAPLG00000024887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018258

1105948 - 1111137

5190