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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1107351_1107680_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1107351 - 1107680

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCTCC

5'SS Class:

major

3'SS Sequence:

CCTTTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

ACTCCCCCAGCT

Flanking Amino Acid:

SGFKVYSLGEENSTNNSTGQ

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

62.8

38.8

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

85.8

0.81

0.7

80.7

24.6

Minor 5ss

39.2

-1.2

2.9

43.1

44.2

Minor BPS

45.3

-0.2

2.1

65.44

44.4

Associated Gene:

Gene:

VANGL2

Ensembl Gene ID:

ENSAPLG00000024887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018258

1105948 - 1111137

5190