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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1107818_1108233_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1107818 - 1108233

Intron Length:

416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGAG

5'SS Class:

strong_major

3'SS Sequence:

CGTGCCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TGGATGCTAACC

Flanking Amino Acid:

ASRFYNVGHLSIQRAAVWIL

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

68.4

36.7

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

70.5

0.46

0.9

62.3

34.7

Minor 5ss

29.1

-2.4

3.4

37.5

47.2

Minor BPS

43.7

-0.5

2.3

56.11

42.1

Associated Gene:

Gene:

VANGL2

Ensembl Gene ID:

ENSAPLG00000024887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018258

1105948 - 1111137

5190