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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1108842_1110859_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1108842 - 1110859
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
TCCCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTGAC
U12 Branch Point Sequence:
CCCTCCTCCACG
Flanking Amino Acid:
DNESTRGDERDDNWGETTTV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
42.7
Major BPS
50
0
1.2
42.7
39.5
Major PPT
76.1
0.59
0.7
68.3
31.9
Minor 5ss
30
-2.3
3.2
31.4
42.6
Minor BPS
47.3
-0.3
2.1
50.75
49.3

Associated Gene:

Gene:
VANGL2
Ensembl Gene ID:
ENSAPLG00000024887
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018258
1105948 - 1111137
5190