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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1130455_1131941_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1130455 - 1131941
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CATCCCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTCTCATCC
Flanking Amino Acid:
IFLVASKELEIITLVVGIAI
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70
0.45
0.8
61.7
34.5
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
58.2
0.24
1.8
71.62
39.4

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656