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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1132845_1133335_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1132845 - 1133335
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGAGCA
5'SS Class:
major
3'SS Sequence:
CATCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTGTATAAACC
Flanking Amino Acid:
TSAIQADPKTVTRMLYGFLI
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
60.2
39
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.8
0.71
0.8
72.9
37
Minor 5ss
30.1
-2.3
3.5
39.7
45.7
Minor BPS
51.9
0.04
2
70.68
40.9

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656