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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1133808_1135048_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1133808 - 1135048
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCCTC
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CCCTCCCCAACC
Flanking Amino Acid:
LTDHQAAFQNRYYQSMYDTP
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60.1
44.8
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
93.1
0.97
0.6
92
18.6
Minor 5ss
41.4
-1
3.3
59.8
44.8
Minor BPS
49
-0
2
59.17
45.8

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656