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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1135219_1135367_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1135219 - 1135367
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAGAA
U12 Branch Point Sequence:
AAGAGCGGAACA
Flanking Amino Acid:
SWMNESVQTQVRNLLDILSD
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
75.6
28.4
Major BPS
46.7
-0.2
0.9
39.1
29
Major PPT
86.3
0.82
0.8
84.1
30.9
Minor 5ss
26.6
-2.7
3
31.4
42.8
Minor BPS
39.6
-0.7
2.3
48.65
41.5

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656