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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1135446_1135631_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1135446 - 1135631
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
NIHSFVELNQVALRNGSVLW
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656