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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1135737_1137120_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1135737 - 1137120
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATGTTTGATT
Flanking Amino Acid:
RNVMFTFFQGETFDYIGSSR
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
54.9
0.24
1.8
70.75
41.2

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656