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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1139158_1140205_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1139158 - 1140205
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATTTGCCCATTT
Flanking Amino Acid:
PGLKCPNDGFGVYSKDYGPQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
42.6
-0.4
2.3
67.34
43.6

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656