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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1140325_1140830_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1140325 - 1140830
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AAATTCACAATT
Flanking Amino Acid:
MILLDGNLFNRKVLMQLKGT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
77.9
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.1
0.77
0.8
76.4
37.7
Minor 5ss
31.3
-2.1
2.9
41.4
45
Minor BPS
48.6
-0
1.7
65.79
38.4

Associated Gene:

Gene:
NCSTN
Ensembl Gene ID:
ENSAPLG00000014723
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015415
1129463 - 1143118
13656