Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1142481_1142994_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1142481 - 1142994

Intron Length:

514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGGCCG

5'SS Class:

major

3'SS Sequence:

TTTTCTTCCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CCTCTCTGAGGT

Flanking Amino Acid:

RGLLLAVLAAGSCQGNSVER

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

44.7

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

83.4

0.75

0.7

77.7

31.1

Minor 5ss

25.2

-2.9

22.7

36.8

Minor BPS

43.5

-0.4

1.9

57.41

45.4

Associated Gene:

Gene:

NCSTN

Ensembl Gene ID:

ENSAPLG00000014723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015415

1129463 - 1143118

13656