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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1143741_1144152_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1143741 - 1144152
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGCAGG
5'SS Class:
major
3'SS Sequence:
TTCCTATTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTCCTATTAATA
Flanking Amino Acid:
TLIDKFDEHDGPVRGIDFHK
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
56.3
48.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
73.3
0.52
0.9
70
34.2
Minor 5ss
34.3
-1.8
2.7
37.5
41
Minor BPS
59.8
0.31
1.6
69.42
37

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873