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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1144227_1144502_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1144227 - 1144502

Intron Length:

276

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCTTT

5'SS Class:

weak_major

3'SS Sequence:

TTGTGTTGCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

CGTACCCTCATT

Flanking Amino Acid:

VSGGDDYKIKVWNYKLRRCL

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

78.8

38.3

Major BPS

0.5

1.1

71.2

35.2

Major PPT

0.54

72.8

42.2

Minor 5ss

68.6

0.63

2.3

82.3

37.5

Minor BPS

46.9

-0.1

2.1

66.06

44.6

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873