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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1145617_1149658_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1145617 - 1149658
Intron Length:
4042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
TTGTCCTTCAAG
Flanking Amino Acid:
DQTVRVWDISGLRKKNLSPG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
61.9
39.6
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
74.7
0.55
1
72.4
38.1
Minor 5ss
38.9
-1.2
3
46.9
44
Minor BPS
59.9
0.17
2
68.51
44.8

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873