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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1151606_1151718_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1151606 - 1151718
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CAGGTCTGAATT
Flanking Amino Acid:
AHPNLNLFAAGHDGGMIVFK
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.5
0.66
0.8
72
37.9
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
49.6
0.05
1.6
60.96
43.4

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873