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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1151870_1152215_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1151870 - 1152215
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GACTTCTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
SKDVAVMQLRSGSKFPVFNM
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.3
0.61
0.9
73.6
36.6
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873