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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1152465_1154551_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1152465 - 1154551

Intron Length:

2087

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCCCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAC

U12 Branch Point Sequence:

GTTTTATTCACT

Flanking Amino Acid:

PKDADSQNPDAPEGKRSSGL

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

77.1

37.8

Major BPS

82.3

0.8

83.6

25.8

Major PPT

80.2

0.68

0.7

73.9

31.2

Minor 5ss

42.2

-0.9

2.9

56.1

42.2

Minor BPS

58.3

0.34

81.55

39.8

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873