Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1155749_1156654_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1155749 - 1156654

Intron Length:

906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGATCC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

GATTGTTCAACT

Flanking Amino Acid:

SITLFDVQQKRTLASVKISK

Intron Amino Acid Position:

652

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

69.9

35.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

84.8

0.78

0.8

76.7

37.4

Minor 5ss

39.7

-1.2

53.1

43.6

Minor BPS

54.5

0.22

74.25

42.4

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873