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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1156741_1157174_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1156741 - 1157174

Intron Length:

434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAT

U12 Branch Point Sequence:

TCCTCCTTACTG

Flanking Amino Acid:

MSHVALLAKHAIMICNRKLE

Intron Amino Acid Position:

681

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

65.4

Major BPS

0.5

59.3

39.1

Major PPT

88.8

0.87

0.7

81.3

36.4

Minor 5ss

38.9

-1.2

2.8

45.7

43.7

Minor BPS

61.1

0.21

1.7

62.41

46.2

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873